It should be possible to sandblast your own fiducials. I know a headstone maker who uses a rubber cutting machine to make stencils which he uses when he sandblasts text or images onto stone. The rubber is roughly 10mm thick and has a sticky back. After you have cut the fiducial just remove the protective layer from the areas that you want to stick to the plastic. Removing the white areas would work best.
After the piece is sandblasted you just need to glue another piece onto it to bring it up to the height of your laser.
Another possible way would be to make your own mould http://www.instructables.com/id/Urethane-Rubber-Molds/ and use a clear epoxy resin in a 2 step process. First fill the mould half way let it set and sandblast the fiducial pattern on. Then place the piece back in the mould and pour some more resin on top of the the fiducial pattern to bring it up to the height of the laser. I have never worked with epoxy resin so this needs testing.
You could also make fiducials for ftir just look how deep sandblasting gets into stone
